Etienne Gnimpieba Zohim

Hunt, M, Hinrichs, A S., Anderson, D, Karim, L, Dearlove, B L., Knaggs, J, Constantinides, B, Fowler, P W., Rodger, G, Street, T, Lumley, S, Webster, H, Sanderson, T, Ruis, C, Kotzen, B, de Maio, N, Amenga-Etego, L N., Amuzu DSY, Avaro, M, Awandare, G A., Ayivor-Djanie, R, Barkham, T, Bashton, M, Batty, E M., Bediako, Y, Belder, D, Benedetti, E, Bergthaler, A, Boers, S A., Campos, J, Carr RAA, Chen YYC, Cuba, F, Dattero, M E., Dejnirattisai, W, Dilthey, A, Duedu, K O., Endler, L, Engelmann, I, Francisco, N M., Fuchs, J, Gnimpieba, Etienne, Groc, S, Gyamfi, J, Heemskerk, D, Houwaart, T, Hsiao, N Y., Huska, M, Hölzer, M, Iranzadeh, A, Jarva, H, Jeewandara, C, Jolly, B, Joseph, R, Kant, R, Ki KKK, Kurkela, S, Lappalainen, M, Lataretu, M, Lemieux, J, Liu, C, Malavige, G N., Mashe, T, Mongkolsapaya, J, Montes, B, Mora JAM, Morang'a, C M., Mvula, B, Nagarajan, N, Nelson, Amy, Ngoi, J M., da Paixão, J P., Panning, M, Poklepovich, T, Quashie, P K., Ranasinghe, D, Russo, M, San, J E., Sanderson, N D., Scaria, V, Screaton, G, Sessions, O M., Sironen, T, Sisay, A, Smith, Diane, Smura, T, Supasa, P, Suphavilai, C, Swann, J, Tegally, H, Tegomoh, B, Vapalahti, O, Walker, A, Wilkinson, R J., Williamson, C, Zair, X, de Oliveira, T, Peto, T E., Crook, D, Corbett-Detig, R, and Iqbal, Z. Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.. bioRxiv : the preprint server for biology, 2024. (DOI: 10.1101/2024.04.29.591666)

Gnimpieba, Etienne, Hartman, T W., Do, T, Zylla, J, Aryal, S, Haas, S J., Agany DDM, Gurung BDS, Doe, V, Yosufzai, Z, Pan, D, Campbell, R, Huber, Victor, Sani, R, Gadhamshetty, V, and Lushbough, Carol. Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities.. Vol. 25, Iss. Supplement_1 Briefings in bioinformatics, 2024. (DOI: 10.1093/bib/bbae429)

Rahman, Md H., Sikder, Rabbi, Tripathi, Manoj, Zahan, Mahzuzah, Ye, Tao, Gnimpieba, Etienne, Jasthi, Bharat K., Dalton, Alan B., and Gadhamshetty, Venkataramana. Machine Learning-Assisted Raman Spectroscopy and SERS for Bacterial Pathogen Detection: Clinical, Food Safety, and Environmental Applications, 140. Vol. 12, Iss. 7 Chemosensors, 2024. (DOI: 10.3390/chemosensors12070140)

Coenye, T, Ahonen, M, Anderson, Steven, Cámara, M, Chundi, P, Fields, M, Foidl, I, Gnimpieba, Etienne, Griffin, Kurt, Hinks, J, Loka, A R., Lushbough, Carol, MacPhee, C, Nater, N, Raval, R, Slater-Jefferies, J, Teo, P, Wilks, S, Yung, M, and Webb, J S.. Global challenges and microbial biofilms: Identification of priority questions in biofilm research, innovation and policy., 100210. Vol. 8 Biofilm, 2024. (DOI: 10.1016/j.bioflm.2024.100210)

Rahman, Md H., Shrestha Gurung, Bichar D., Jasthi, Bharat K., Gnimpieba, Etienne, and Gadhamshetty, Venkataramana. Automated Crack Detection in 2D Hexagonal Boron Nitride Coatings Using Machine Learning, 726. Vol. 14, Iss. 6 Coatings, 2024. (DOI: 10.3390/coatings14060726)

Gnimpieba, Etienne, Diing, D M., Ailts, J, Cucak, A, Gakh, O, Isaya, G, Vitiello, S, Wang, S, Pierce, P, Cooper, A, Roux, Kyle, Rogers, L K., and Vitiello, Peter. Mapping Novel Frataxin Mitochondrial Networks Through Protein- Protein Interactions.. Research square, 2024. (DOI: 10.21203/rs.3.rs-4259413/v1)

Ceskoutsé, Ribot F., Bomgni, Alain B., Gnimpieba Zanfack, David R., Agany, Diing D., Bouetou Bouetou, Thomas, and Gnimpieba Zohim, Etienne. Sub-clustering based recommendation system for stroke patient: Identification of a specific drug class for a given patient, 108117. Vol. 171 Computers in Biology and Medicine, 2024. (DOI: 10.1016/j.compbiomed.2024.108117)

Devadig, Ramesh, Shrestha Gurung, Bichar D., Gnimpieba, Etienne, Jasthi, Bharath, and Gadhamshetty, Venkataramana. Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4494-4496. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385810)

Do, Tuyen, Bomgni, Alain, Aryal, Shiva, Gadhamshetty, Venkataramana, Agany, Diing D., Hartman, Tim, Shrestha Gurung, Bichar D., Lushbough, Carol, and Gnimpieba, Etienne. Data-Driven 2D Material Discovery Using Biofilm Data and Information Discovery System (Biofilm-DIDS). In Machine Learning in 2D Materials Science, 147-162. CRC Press, 2023. (DOI: 10.1201/9781003132981-8)

Hasan, Md M., Sikder, Rabbi, Jasthi, Bharat K., Gnimpieba, Etienne, and Gadhamshetty, Venkataramana. Discovery of 2D Materials with Machine Learning. In Machine Learning in 2D Materials Science, 59-88. CRC Press, 2023. (DOI: 10.1201/9781003132981-4)

Bomgni, Alain B., Abdala, Dialo, Shrestha Gurung, Bichar D., Julius Nkenlifack, Marcellin, Gadhamshetty, Venkataramana, and Etienne Gnimpieba, Z.. Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4473-4479. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385403)

Singh, Ram N., Gnimpieba, Etienne, and Sani, Rajesh K.. Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4509-4512. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10386063)

Bomgni, Alain B., Mbotchack Ngale, Claude E., Aryal, Shiva, Nkenlifack, Marcellin J., Gadhamshetty, Venkataramana, and Etienne Gnimpieba, Z.. NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4480-4487. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385626)

Handa, Vaibhav, Dhiman, Saurabh, Jawaharraj, Kalimuthu, Peta, Vincent, Bomgni, Alain, Gnimpieba, Etienne, and Gadhamshetty, Venkataramana. Quorum Sensing Mechanisms, Biofilm Growth, and Microbial Corrosion Effects of Bacterial Species. In Machine Learning in 2D Materials Science, 133-146. CRC Press, 2023. (DOI: 10.1201/9781003132981-7)

Haas, Samuel, Shrestha Gurung, Bichar D., Hartman, Timothy W., Do, Tuyen, and Gnimpieba, Etienne. SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4503-4505. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385433)

Shrestha Gurung, Bichar D., Khanal, Anup, Hartman, Timothy W., Do, Tuyen, Chataut, Sandeep, Lushbough, Carol, Gadhamshetty, Venkataramana, and Gnimpieba, Etienne. Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4500-4502. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385974)

Do, Tuyen, Shrestha Gurung, Bichar D., Aryal, Shiva, Khanal, Anup, Chataut, Sandeep, Gadhamshetty, Venkataramana, Lushbough, Carol, and Gnimpieba, Etienne. Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 4497-4499. IEEE, 2023. (DOI: 10.1109/bibm58861.2023.10385544)

Jawaharraj, K, Peta, V, Dhiman, S S., Gnimpieba, Etienne, and Gadhamshetty, V. Transcriptome-wide marker gene expression analysis of stress-responsive sulfate-reducing bacteria., 16181. Vol. 13, Iss. 1 Scientific reports, 2023. (DOI: 10.1038/s41598-023-43089-8)

Zylla, J L., Gnimpieba, Etienne, Bomgni, A B., Sani, R K., Subramaniam, M, Lushbough, Carol, Winter, R, Gadhamshetty, V R., and Chundi, P. Convergence research and training in computational bioengineering: a case study on AI/ML driven biofilm-material interaction discovery.. Research square, 2023. (DOI: 10.21203/rs.3.rs-3318640/v1)

Peta, V J., Hartman, T, Aryal, S, Gurung, B S., Singh, Rajesh, Haas, S, Bomgni, A, Do, T, Dhiman, S S., Gadhamshetty, V, and Gnimpieba, Etienne. CREID - A ChemoReceptor-Effector Interaction Database.. bioRxiv : the preprint server for biology, 2023. (DOI: 10.1101/2023.05.04.539426)

Raya, D, Peta, V, Bomgni, A, Du Do, T, Kalimuthu, J, Salem, D R., Gadhamshetty, V, Gnimpieba, Etienne, and Dhiman, S S.. Classification of bacterial nanowire proteins using Machine Learning and Feature Engineering model.. bioRxiv : the preprint server for biology, 2023. (DOI: 10.1101/2023.05.03.539336)

Saxena, P, Rauniyar, S, Thakur, P, Singh, Rajesh, Bomgni, A, Alaba, M O., Tripathi, A K., Gnimpieba, Etienne, Lushbough, Carol, and Sani, R K.. Integration of text mining and biological network analysis: Identification of essential genes in sulfate-reducing bacteria., 1086021. Vol. 14 Frontiers in microbiology, 2023. (DOI: 10.3389/fmicb.2023.1086021)

Sane, Sanam, Srinivasan, Rekha, Potts, Rashaun A., Eikanger, Morgan, Zagirova, Diana, Freeling, Jessica, Reihe, Casey A., Antony, Ryan M., Gupta, Brij K., Lynch, Douglas, Bleeker, Jonathan, Turaihi, Hassan, Pillatzki, Angela, Zhou, Wei, Luo, Xu, Linnebacher, Michael, Agany, Diing, Zohim, Etienne G., Humphrey, Lisa E., Black, Adrian R., and Rezvani, Khosrow. UBXN2A suppresses the Rictor-mTORC2 signaling pathway, an established tumorigenic pathway in human colorectal cancer, 1763--1776. Vol. 42, Iss. 21 Oncogene, 2023. (DOI: 10.1038/s41388-023-02686-7)

Hartman, T W., Radichev, E, Ali, H M., Alaba, M O., Hoffman, M, Kassa, G, Sani, R, Gadhamshetty, V, Ragi, S, Messerli, S M., De la Puente, Pilar, Sandhurst, E S., Do, T, Lushbough, Carol, and Gnimpieba, Etienne. BASIN: A Semi-automatic Workflow, with Machine Learning Segmentation, for Objective Statistical Analysis of Biomedical and Biofilm Image Datasets., 167895. Vol. 435, Iss. 2 Journal of molecular biology, 2023. (DOI: 10.1016/j.jmb.2022.167895)

Thakur, P, Alaba, M O., Rauniyar, S, Singh, Rajesh, Saxena, P, Bomgni, A, Gnimpieba, Etienne, Lushbough, Carol, Goh, K M., and Sani, R K.. Text-Mining to Identify Gene Sets Involved in Biocorrosion by Sulfate-Reducing Bacteria: A Semi-Automated Workflow.. Vol. 11, Iss. 1 Microorganisms, 2023. (DOI: 10.3390/microorganisms11010119)

Kassa, Gideon, Liu, Jifeng, Hartman, Timothy W., Dhiman, Saurabh, Gadhamshetty, Venkataramana, and Gnimpieba, Etienne. Artificial Intelligence Based Organic Synthesis Planning for Material and Bio-Interface Discovery. In ACS Symposium Series, 93--111. American Chemical Society, 2023. (DOI: 10.1021/bk-2023-1434.ch006)

Zanfack, David R., Bellaïche, Adam, Etchebest, Catherine, Dhiman, Saurabh, Gadhamshetty, Venkataramana, Bomgni, Alain B., and Gnimpieba, Etienne. Data Mining and Machine Learning over HPC Approach Enhancing Antibody Conformations Prediction. In ACS Symposium Series, 75--92. American Chemical Society, 2023. (DOI: 10.1021/bk-2023-1434.ch005)

Gnimpieba, Etienne. Microbial Stress Response: Mechanisms and Data Science., Editors Dhiman, Saurabh Sudha; Gnimpieba, Etienne Z.; Gadhamshetty, Venkataramana. American Chemical Society, 2023. (DOI: 10.1021/bk-2023-1434)

Cavalier, Etienne. Role of the Clinical Laboratory in the Assessment of Metabolic Musculoskeletal Diseases, 123-125. Vol. 112, Iss. 2 Calcified Tissue International, 2022. (DOI: 10.1007/s00223-022-01045-0)

Allen, C, Aryal, S, Do, T, Gautum, R, Hasan, M M., Jasthi, B K., Gnimpieba, Etienne, and Gadhamshetty, V. Deep learning strategies for addressing issues with small datasets in 2D materials research: Microbial Corrosion., 1059123. Vol. 13 Frontiers in microbiology, 2022. (DOI: 10.3389/fmicb.2022.1059123)

Raya, D, Shreya, A, Kumar, A, Giri, S K., Salem, D R., Gnimpieba, Etienne, Gadhamshetty, V, and Dhiman, S S.. Molecular regulation of conditioning film formation and quorum quenching in sulfate reducing bacteria., 1008536. Vol. 13 Frontiers in microbiology, 2022. (DOI: 10.3389/fmicb.2022.1008536)

Freeman, Harry, Scholl, Jamie L., AnisAbdellatif, Musheera, Gnimpieba, Etienne, Forster, Gina, and Jacob, Suma. Corrigendum to “I only have eyes for you: Oxytocin administration supports romantic attachment formation through diminished interest in close others and strangers” [Psychoneuroendocrinology 134 (2021)], 105871. Vol. 144 Psychoneuroendocrinology, 2022. (DOI: 10.1016/j.psyneuen.2022.105871)

Joly, Etienne. Faculty Opinions recommendation of Assessing suspension and infectivity times of virus-loaded aerosols involved in airborne transmission.. In Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature. H1 Connect, 2022. (DOI: 10.3410/f.742268287.793595079)

Nakagawa-Saito, Yurika, Saitoh, Shinichi, Mitobe, Yuta, Sugai, Asuka, Togashi, Keita, Suzuki, Shuhei, Kitanaka, Chifumi, and Okada, Masashi. HDAC Class I Inhibitor Domatinostat Preferentially Targets Glioma Stem Cells over Their Differentiated Progeny, 8084. Vol. 23, Iss. 15 International Journal of Molecular Sciences, 2022. (DOI: 10.3390/ijms23158084)

Rezvani, Khosrow, Srinivasan, Rekha, Potts, Rashaun, Eikanger, Morgan, Zagirova, Diana, Freeling, Jessica, Reihe, Casey, Antony, Ryan, Gupta, Brij, Lynch, Douglas, Bleeker, Jonathan, Turaihi, Hassan, Pillatzki, Angela, Zhou, Wei, Luo, Xu, Agany, Diing, Zohim, Etienne, Humphrey, Lisa, and Black, Adrian. UBXN2A suppresses the Rictor-mTORC2 signaling pathway, an established tumorigenic pathway in human colorectal cancer. (DOI: 10.21203/RS.3.RS-1867481/V1)

Freeman, Harry, Scholl, Jamie, AnisAbdellatif, Musheera, Forster, Gina, Jacob, Suma, Kaflay, Sabi, Bam, Rajeev, Do, Tuyen, and Gnimpieba, Etienne. Experimental data exploring the effects of intranasal oxytocin on young adult social preference and attachment to romantic partners, parents, friends, and strangers. Data in Brief / Elsevier, 2022. (DOI: https://doi.org/10.1016/j.dib.2022.108283)

Freeman, Harry, Gnimpieba, Etienne, and AnisAbdellatif, Musheera. Supplemental Materials for: A Qualitative Validation of Two Diagrammatic Measures of Attachment Network Structure. PsychArchives, 2022.

Gasper, William, Ma, Jiahao, Ghersi, Dario, Gnimpieba, Etienne, Gadhamshetty, Venkataramana, and Chundi, Parvathi. Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669520)

Tripathi, Abhilash K., Saxena, Priya, Thakur, Payal, Rauniyar, Shailabh, Gopalakrishnan, Vinoj, Singh, Ram N., Olakunle, Mathew A., Gnimpieba, Etienne, and Sani, Rajesh K.. Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669374)

Fotseu, Ernest B., Nembot, Thierry K., Sani, Rajesh K., Gadhamshetty, Venkataramana, Etienne Gnimpieba, Z., and Bomgni, Alain B.. GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669827)

Thakur, Payal, Rauniyar, Shailabh, Tripathi, Abhilash K., Saxena, Priya, Gopalakrishnan, Vinoj, Singh, Ram N., Olakunle, Mathew A., Gnimpieba, Etienne, and Sani, Rajesh K.. Identifying genes involved in biocorrosion from the literature using text-mining. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669354)

Saxena, Priya, Tripathi, Abhilash K., Thakur, Payal, Rauniyar, Shailabh, Gopalakrishnan, Vinoj, Singh, Ram N., Olakunle, Mathew A., Gnimpieba, Etienne, and Sani, Rajesh K.. Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669712)

Nembot, Thierry K., Fotseu, Ernest B., Sani, Rajesh K., Etienne Gnimpieba, Z., Lushbough, Carol, and Bomgni, Alain B.. Prediction of essential genes in G20 using machine learning model. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. (DOI: 10.1109/bibm52615.2021.9669756)

Bosch, Taylor, Groth, C, Eldridge, T A., Gnimpieba, Etienne, Baugh, Lee A., and Singh, Arun. Altered Cerebellar Oscillations in Parkinson's Disease Patients during Cognitive and Motor Tasks., 185-196. Vol. 475 Neuroscience, 2021. (DOI: 10.1016/j.neuroscience.2021.08.021)

Freeman, Harry, AnisAbdellatif, Musheera, and Gnimpieba, Etienne. Multistudy Report: A Qualitative Validation of Two Diagrammatic Measures of Attachment Network Structure. European Journal of Psychological Assessment/Hogrefe, 2021. (DOI: https://doi.org/10.1027/1015-5759/a000681)

Cavalier, Etienne. Long-term stability of 25-hydroxyvitamin D: importance of the analytical method and of the patient matrix, e389-e391. Vol. 59, Iss. 10 Clinical Chemistry and Laboratory Medicine (CCLM), 2021. (DOI: 10.1515/cclm-2021-0382)

Freeman, Harry, Scholl, J L., AnisAbdellatif, Musheera, Gnimpieba, Etienne, Forster, Gina, and Jacob, S. I only have eyes for you: Oxytocin administration supports romantic attachment formation through diminished interest in close others and strangers., 105415. Vol. 134 Psychoneuroendocrinology, 2021. (DOI: 10.1016/j.psyneuen.2021.105415)

Freeman, Harry, Scholl, Jamie L., AnisAbdellatif, Musheera, Gnimpieba, Etienne, Forster, Gina, and Jacob, Suma. I only have eyes for you: Oxytocin administration supports romantic attachment formation through diminished interest in close others and strangers, 105415. Psychoneuroendocrinology, 2021. (DOI: https://doi.org/10.1016/j.psyneuen.2021.105415)

Bosch, Taylor J., Groth, Christopher, Eldridge, Tiffany A., Gnimpieba, Etienne, Baugh, Lee A., and Singh, Arun. Altered Cerebellar Oscillations in Parkinson's Disease Patients during Cognitive and Motor Tasks, 185-196. Vol. 475 NEUROSCIENCE, 2021. (DOI: 10.1016/j.neuroscience.2021.08.021)

Freeman, Harry, Scholl, Jamie L., AnisAbdellatif, Musheera, Gnimpieba, Etienne, Forster, Gina, and Jacob, Suma. I only have eyes for you: Oxytocin administration supports romantic attachment formation through diminished interest in close others and strangers. Vol. 134 PSYCHONEUROENDOCRINOLOGY, 2021. (DOI: 10.1016/j.psyneuen.2021.105415)

Potts, Rashaun, Peta, Vincent, Agany, Diing D. M., Gnimpieba, Etienne, Cooper, Richard, Wang, Changlu, and Pietri, Jose. Molecular analysis of the blood meals and bacterial communities of bed bugs (Cimex lectularius L.) to assess interactions with alternative hosts, 1209-1217. Vol. 120, Iss. 4 PARASITOLOGY RESEARCH, 2021. (DOI: 10.1007/s00436-021-07079-x)

Messerli, Shanta M., Hoffman, Mariah M., Zylla, Jessica S., Gnimpieba, Etienne, and Miskimins, Keith. Abstract 1761: Examination of therapeutic potential of epigenetic modulation by dual HDAC-LSD1 inhibition in murine models of triple negative breast cancer (TNBC), 1761-1761. Vol. 80, Iss. 16_Supplement Cancer Research, 2020. (DOI: 10.1158/1538-7445.am2020-1761)

Agany DDM, Pietri, Jose, and Gnimpieba, Etienne. Assessment of vector-host-pathogen relationships using data mining and machine learning., 1704-1721. Vol. 18 Computational and structural biotechnology journal, 2020. (DOI: 10.1016/j.csbj.2020.06.031)

Pietri, Jose, Yax, J A., Agany DDM, Gnimpieba, Etienne, and Sheele, J M.. Body lice and bed bug co-infestation in an emergency department patient, Ohio, USA., e00696. Vol. 19 IDCases, 2020. (DOI: 10.1016/j.idcr.2020.e00696)

Hoffman, Mariah M., Zylla, Jessica S., Bhattacharya, Somshuvra, Calar, Kristin, Hartman, Timothy W., Bhardwaj, Ratan D., Miskimins, W. K., de la Puente, Pilar, Gnimpieba, Etienne, and Messerli, Shanta M.. Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid. Vol. 12, Iss. 3 CANCERS, 2020. (DOI: 10.3390/cancers12030756)

Pietri, Jose, Yax, Justin A., Agany, Diing D. M., Gnimpieba, Etienne, and Sheele, Johnathan M.. Body lice and bed bug co-infestation in an emergency department patient, Ohio, USA. Vol. 19 IDCASES, 2020. (DOI: 10.1016/j.idcr.2020.e00696)

Messerli, Shanta M., Hoffman, Mariah M., Zylla, Jessica S., Gnimpieba, Etienne, and Miskimins, Keith. Examination of therapeutic potential of epigenetic modulation by dual HDAC-LSD1 inhibition in murine models of triple negative breast cancer (TNBC). Vol. 80, Iss. 16 CANCER RESEARCH, 2020. (DOI: 10.1158/1538-7445.AM2020-1761)

Agany, Diing D. M., Potts, Rashaun, Hernandez, Jose L. Gonzalez, Gnimpieba, Etienne, and Pietri, Jose. MICROBIOME DIFFERENCES BETWEEN HUMAN HEAD AND BODY LICE ECOTYPES REVEALED BY 16S RRNA GENE AMPLICON SEQUENCING, 14-24. Vol. 106, Iss. 1 JOURNAL OF PARASITOLOGY, 2020. (DOI: 10.1645/19-132)

Gnimpieba, Etienne, VanDiermen, Menno S., Gustafson, Shayla M., Conn, Bill, and Lushbough, Carol. Bio-TDS: bioscience query tool discovery system (vol 45, pg D1117, 2017), 9251-9251. Vol. 46, Iss. 17 NUCLEIC ACIDS RESEARCH, 2018. (DOI: 10.1093/nar/gky564)

Messerli, S M., Hoffman, M M., Gnimpieba, Etienne, Kohlhof, H, and Bhardwaj, R D.. 4SC-202 as a Potential Treatment for the Pediatric Brain Tumor Medulloblastoma.. Vol. 7, Iss. 11 Brain sciences, 2017. (DOI: 10.3390/brainsci7110147)

Messerli, S M., Hoffman, M M., Gnimpieba, Etienne, and Bhardwaj, R D.. Therapeutic Targeting of PTK7 is Cytotoxic in Atypical Teratoid Rhabdoid Tumors., 973-983. Vol. 15, Iss. 8 Molecular cancer research : MCR, 2017. (DOI: 10.1158/1541-7786.MCR-16-0432)

Gnimpieba, Etienne, VanDiermen, M S., Gustafson, S M., Conn, B, and Lushbough, Carol. Bio-TDS: bioscience query tool discovery system., D1117-D1122. Vol. 45, Iss. D1 Nucleic acids research, 2017. (DOI: 10.1093/nar/gkw940)

Gray-Lobe, Geoffrey, Suriani, Alexandra, and Gnimpieba, Etienne. DISCOVERING GENETIC PATHWAYS INVOLVED IN SOYBEAN ROOT NODULE DEVELOPMENT VIA BIOINFORMATIC ANALYSIS. In Proceedings of the South Dakota Academy of Science, 189-189. Vol. 96 PROCEEDINGS OF THE SOUTH DAKOTA ACADEMY OF SCIENCE, VOL 96, 2017.

Hoffman, Mariah M., Minette, Carrie J., Messerli, Shanta M., Bhardwaj, Ratan D., and Gnimpieba, Etienne. NanoStringBioNet: Integrated R Framework for Bioscience Knowledge Discovery from NanoString nCounter Data. In IEEE International Conference on Bioinformatics and Biomedicine-BIBM, 2157-2162. 2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2017.

Lushbough, Carol, Gnimpieba, Etienne, and Dooley, Rion. Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure, 408–419. Vol. 27 Concurrency Computation, 2015. (DOI: 10.1002/cpe.3237)

Gnimpieba, Etienne, Thavappiragasam, Mathialakan, Chango, Abalo, Conn, Bill, and Lushbough, Carol. SBMLDock: Docker driven systems biology tool development and usage. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 282–285. Vol. 9308 (DOI: 10.1007/978-3-319-23401-4_24)

Thavappiragasam, Mathialakan, Lushbough, Carol, and Gnimpieba, Etienne. Automatic biosystems comparison using semantic and name similarity. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB ’14, 790–796. New York, New York, USA: ACM Press, 2014. (DOI: 10.1145/2649387.2660850)

Larson, Jordy, Chango, Abalo, Conn, Bill, Lushbough, Carol, and Gnimpieba, Etienne. Biological system analysis using integrated bioinformatics tools : Levels of the central dogma in Folate Mediate One-Carbon Metabolism ( FOCM ), 4–7. Proceeding of BIOCOMP’14 - The 2014 International Conference on Bioinformatics & Computational Biology, ISBN: 1-60132-265-8, H. R. A. Al., Ed. CSREA Press., 2014.

Thavappiragasam, Mathialakan, Lushbough, Carol, and Gnimpieba, Etienne. Heuristic parallelizable algorithm for similarity based biosystems comparison. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB ’14, 782–789. New York, New York, USA: ACM Press, 2014. (DOI: 10.1145/2649387.2660849)

Gnimpieba, Etienne, Bousserouel, Souad, and Chango, Abalo. Mathematical Modeling of a Metabolic Network to Study the Impact of Food Contaminants on Genomic Methylation and DNA Instability, 1–7. Vol. 02, Iss. 10 Journal of Biosciences and Medicines, 2014. (DOI: 10.4236/jbm.2014.210001)

Weinandt, Nick, Jackson, Laura M., Gnimpieba, Etienne, and Lushbough, Carol. Pheno2GRN. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB ’14, 797–804. New York, New York, USA: ACM Press, 2014. (DOI: 10.1145/2649387.2660851)

Mallipeddi, Suman R., Lushbough, Carol, and Gnimpieba, Etienne. Reference Integrator : a workflow for similarity driven multi-sources publication merging ., 1–2. Proceeding of The 2014 International Conference on Information and Knowledge Engineering, IKE’14, 2014.

Gnimpieba, Etienne, Chango, Abalo, and Lushbough, Carol. RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB ’14, 661–669. New York, New York, USA: ACM Press, 2014. (DOI: 10.1145/2649387.2660822)

Thavappiragasam, Mathialakan, Lushbough, CM, and Gnimpieba, EZ. SBMLChecker, a Semantic approach for SBML model reliability evaluation., 2–5. worldcomp-proceedings.com, 2014.

Gnimpieba, Etienne, and Lushbough, Carol. WMS4HPC , a Workflow Management System bridge for High Performance Computing in life science data management. Iss. I Proceeding of BIOCOMP’14 - The 2014 International Conference on Bioinformatics & Computational Biology, ISBN: 1-60132-265-8, H. R. A. Al., Ed. CSREA Press., 2014.

Koné, Kisselmina Y., Druon, Cyril, Gnimpieba, Etienne, Delmotte, Michel, Duquenoy, Albert, and Laguerre, Jean-Claude. Power density control in microwave assisted air drying to improve quality of food, 750–757. Vol. 119, Iss. 4 Journal of Food Engineering, 2013. (DOI: 10.1016/j.jfoodeng.2013.06.044)

Gnimpieba, Etienne, Jennewein, Douglas, Fuhrman, Luke, and Lushbough, Carol. Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches., Editors Al., Hamid R. Arabnia. Las Vegas: Proceeding of The 2013 International Conference on Information and Knowledge Engineering, IKE’13, 2013.

Lushbough, Caro M., Gnimpieba, Etienne, and Dooley, Rion. BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources. In 2013 IEEE International Conference on Cluster Computing (CLUSTER), 1–3. IEEE, 2013. (DOI: 10.1109/CLUSTER.2013.6702692)

Larson, Jordyn J., Abalo, Chango, Lushbough, Carol, and Gnimpieba Z., Etienne. Biological System Analysis using Integrated Bioinformatics Tools: Linking metabolites, proteins, and genes in Folate Mediate One-Carbon Metabolism (FOCM). In SD-BRIN 2013 UGF convocation.

Gnimpieba, EZ, and Jennewein, Douglas. Multidisciplinarity in Knowledge Transmision Management System (KTMS) evaluation., Editors Ibrahim, Hamidah. Las Vegas: Proceeding of The 2013 International Conference on e-Learning, e-Business, Enterprise Information Systems, and e-Government, EEE’13, 2013.

Gnimpieba, EZ. RESTful API in life science research systems and data integration challenges: linking metabolic pathway, metabolic network, gene and publication.., Editors hamid R., Arabnia, 66–69. Iss. 2 …of Communication and …, 2013.

Gnimpieba, EZ. RESTful API in life science research systems and data integration challenges: linking metabolic pathway, metabolic network, gene and publication., xx. Iss. 10 …of Communication and …, 2013.

Chango, Abalo, Gnimpieba, Etienne, and Eveillard, Damien. Mathematical modeling of one-carbon metabolism in trisomy 21, lb420. Vol. 26 The FASEB Journal, 2012.

Abalo Chango1, Etienne Z. Gnimpieba1, Damien Eveillard2, Jean-Louis Guéant3.. Dynamical In Silico study of vitamin B12 (cobalamin) on MS and MSR activities in the methionine metabolism extend to FOCM.. In Vitamin B12 symposium, 12. Vol. 12

Gnimpiba Z., Etienne, Chango, Abalo, and Lushbough, Carol. Folate intake and mthfr gene expression profile in Parkinson Disease risk study : in silico approach .. In CHI NGS’12. University of South Dakota, 2012.

Gnimpieba, Etienne, Lushbough, Carol, Eveillard, Damien, Guéant, Jean-louis, and Chango, Abalo. In sillico studying of gene-metabolic interaction on pathogenesis: CBS gene (21q22.3) over-expression in folate metabolism and Down Syndrome.. In Proceeding of the 2nd annual Symp. on Ubiquintin, Protein Quality Control, and Mol. Path, PQCD’12, editors Wang, Xuenjun, 41. Vol. 91, Iss. 2007 Deadwood Gulch Resort: PQCD Research Center of University of South Dakota, 2012.

Gnimpieba, Etienne, Eveillard, Damien, Guéant, Jean-Louis, and Chango, Abalo. Using logic programming for modeling the one-carbon metabolism network to study the impact of folate deficiency on methylation processes., 2508–21. Vol. 7, Iss. 8 Molecular bioSystems, 2011. (DOI: 10.1039/c1mb05102d)

Gnimpieba, Etienne, Eveillard, D, Guéant, J L., and Chango, A. Using logic programming for modeling the one-carbon metabolism network to study the impact of folate deficiency on methylation processes., 2508-21. Vol. 7, Iss. 8 Molecular bioSystems, 2011. (DOI: 10.1039/c1mb05102d)

Chango, Abalo, Bousserouel, Souad, Gnimpieba, Etienne, Nour, Afif A M Abdel, Abdennebi-Najar, Latifa, Etienne Z. Gnimpieba, Afif Abdel Nour, Latifa Abdennebi-Najar, Abalo, and Chango. Arsenic Exposure and Folate Deficiency and Methyl Group Metabolism in Human Fibroblast Cell Lines, S42. Vol. 2, Iss. S1 Journal of Developmental Origins of Health and Disease, 2011. (DOI: 10.1017/S2040174411000481)

Chango, Abalo, and Gnimpieba, Etienne. Mathematical modelling of the one-carbon metabolism network by using logic programming, 987.6. Vol. 25 The FASEB Journal, 2011.

Gnimpieba Z., Etienne, Damien, Eveillard, Gueant, J-L., and Abalo, Chango. Mathematical modeling of folate mediated one-carbon metabolism: analysis of CBS gene (21q22.3) over-expression. In Proceeding of the 2011Trisomy 21 and Systems Biology International Scientific meeting, T21&SB’11.

Gnimpieba Z., Etienne, Nour, Afif M., Eveillard, Damien, and Abalo, Chango. Modelling gene expression of the one-carbon metabolic network shows a strong influence of folate deficiency in the transmethylation and in the remethylation pathways. In 10th ICMAA-International Conference on Mechanisms of Antimutagenesis and Anticarcinogenesis.

Freeman, Harry, AnisAbdellatif, Musheera, and Gnimpieba, Etienne. A Qualitative Validation of Two Diagrammatic Measures of Attachment Network Structure. European Journal of Psychological Assessment. (DOI: 10.1027/1015-5759/a000681)

Genier, Etienne. An ultra-flat, low-noise and linearly polarized fiber supercontinuum source covering 670 nm-1390 nm. Institute of Electrical and Electronics Engineers (IEEE). (DOI: 10.36227/techrxiv.14192114.v1)

Hoffman, Mariah M., Zylla, Jessica S., Bhattacharya, Somshuvra, Calar, Kristin, Hartman, Timothy W., Bhardwaj, Ratan D., Miskimins, W. K., De la Puente, Pilar, Gnimpieba, Etienne, and Messerli, Shanta M.. Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid, 756. Vol. 12, Iss. 3 Cancers. (DOI: 10.3390/cancers12030756)

Bomgni, Alain B., Fotseu, Ernest B., Wambo, Daril R., Sani, Rajesh K., Lushbough, Carol, and Zohim, Etienne G.. Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set.. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). (DOI: 10.1109/bibm55620.2022.9995269)

Hoffman, Mariah M., Minette, Carrie, Messerli, Shanta M., Bhardwaj, Ratan D., and Gnimpieba, Etienne. BIBM - NanoStringBioNet: Integrated R framework for bioscience knowledge discovery from NanoString nCounter data. In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). (DOI: 10.1109/bibm.2017.8217992)

Gnimpieba, Etienne. Bio-Question Driven Bioimage Informatics Workflow Design Using Bio-TDS.

Gnimpieba, Etienne. Bio-TDS - the Bioquery Tool Discovery System.

Hoffman, Mariah M., Radichev, Evgeni, Minette, Carrie, and Gnimpieba, Etienne. BrainSABER v0.99.5: transcriptomic similarity assessment toolkit and web application for the BrainSpan developmental dataset analysis. F1000Research.

Messerli, Shanta M., Hoffman, Mariah M., Gnimpieba, Etienne, and Bhardwaj, Ratan D.. Data from Therapeutic Targeting of PTK7 is Cytotoxic in Atypical Teratoid Rhabdoid Tumors. American Association for Cancer Research (AACR). (DOI: 10.1158/1541-7786.c.6541314.v1)

Messerli, Shanta M., Hoffman, Mariah M., Gnimpieba, Etienne, and Bhardwaj, Ratan D.. Data from Therapeutic Targeting of PTK7 is Cytotoxic in Atypical Teratoid Rhabdoid Tumors. American Association for Cancer Research (AACR). (DOI: 10.1158/1541-7786.c.6541314)

Zohim, Etienne G., Hartman, Tim, and Ali, Hafiz. Dataset: BASIN: a workflow for objective statistical analysis of bioimage datasets.

Kone, Kisselmina Y., Gnimpieba, Zohim E., Soro, Doudjo, Assidjo, Nogbou E., and Laguerre, Jean-Claude. Effect of Shape of a Fruit Model-Product (Sodium Alginate Gel) Dryed by Microwave and Modeling of Drying Kinetics. Asian Journal of Agriculture and Food Sciences.

Chango, Abalo, Bousserouel, Souad, Gnimpieba, Etienne, Nour, Afif M., and Abdennebi-Najar, Latifa. Effects of arsenic exposure and folate deficiency on methyl metabolism in human fibroblast cell lines. The FASEB Journal.

Bomgni, Alain B., Mdemaya, Garrik B., Ali, Hafiz M., Zanfack, David G., and Zohim, Etienne G.. ESPINA: efficient and secured protocol for emerging IoT network applications. Cluster Computing. (DOI: 10.1007/s10586-021-03493-z)

Saloux, Etienne. Exploring Building Performance Evaluation Methods to Estimate Energy Savings Following Field Implementation. Elsevier BV. (DOI: 10.2139/ssrn.4911813)

Tripathi, Abhilash K., Thakur, Payal, Saxena, Priya, Rauniyar, Shailabh, Gopalakrishnan, Vinoj, Singh, Ram N., Gadhamshetty, Venkataramana, Gnimpieba, Etienne, Jasthi, Bharat K., and Sani, Rajesh K.. Gene Sets and Mechanisms of Sulfate-Reducing Bacteria Biofilm Formation and Quorum Sensing With Impact on Corrosion. Vol. 12 Frontiers in Microbiology. (DOI: 10.3389/fmicb.2021.754140)

Raya, Dheeraj, Shreya, Aritree, Kumar, Anil, Giri, Shiv K., Salem, David R., Gnimpieba, Etienne, Gadhamshetty, Venkataramana, and Dhiman, Saurabh S.. Molecular regulation of conditioning film formation and quorum quenching in sulfate reducing bacteria. Vol. 13 Frontiers in Microbiology. (DOI: 10.3389/fmicb.2022.1008536)

Mtopi, Yann B., Bomgni, Alain B., Ali, Hafiz M., Zanfack, David R., Ejaz, Waleed, Djamegni, Clémentin T., and Gnimpieba, Etienne. MultiHop optimal time complexity clustering for emerging IoT applications. Cluster Computing. (DOI: 10.1007/s10586-022-03637-9)

Naude, Etienne. Non-Planar Ironing to Improve Material Extrusion Surface Finishes. Elsevier BV. (DOI: 10.2139/ssrn.4868308)

KRISTI, ENGLAND, RICK, EVANS, EAGAPPANATH, THIRUPPATHI, DAVID, URE, MATT, KOSTURA, and ETIENNE, GNIMPIEBA. REAGENTS AND METHODS FOR CANCER DETECTION, PROGNOSIS, AND THERAPEUTIC MONITORING. Iss. WO 2020/251916 A3

Zylla, Jessica L., Hoffman, Mariah M., Plesselova, Simona, Bhattacharya, Somshuvra, Calar, Kristin, Afeworki, Yohannes, De la Puente, Pilar, Gnimpieba, Etienne, Miskimins, W. K., and Messerli, Shanta M.. Reduction of Metastasis via Epigenetic Modulation in a Murine Model of Metastatic Triple Negative Breast Cancer (TNBC), 1753. Vol. 14, Iss. 7 Cancers. (DOI: 10.3390/cancers14071753)

Jessica L.S. Zylla*, Mariah M. Hoffman*, null, null, Calar, Kristin, null, null, Pilar De La Puente, Gnimpieba, Etienne, Miskimins, W. K., and Messerli, Shanta M.. Supplementary Files: Reduction of Metastasis via Epigenetic Modulation in a Murine Model of Metastatic Triple Negative Breast Cancer (TNBC). (DOI: 10.5281/zenodo.5818063)

Messerli, Shanta M., Hoffman, Mariah M., Gnimpieba, Etienne, and Bhardwaj, Ratan D.. Supplementary Information from Therapeutic Targeting of PTK7 is Cytotoxic in Atypical Teratoid Rhabdoid Tumors. American Association for Cancer Research (AACR). (DOI: 10.1158/1541-7786.22516224)

Messerli, Shanta M., Hoffman, Mariah M., Gnimpieba, Etienne, and Bhardwaj, Ratan D.. Supplementary Information from Therapeutic Targeting of PTK7 is Cytotoxic in Atypical Teratoid Rhabdoid Tumors. American Association for Cancer Research (AACR). (DOI: 10.1158/1541-7786.22516224.v1)

Paulsen, Riley T., Agany, Diing D., Petersen, Jason, Davis, Christel M., Ehli, Erik, Gnimpieba, Etienne, and Burrell, Brian. The Draft Reference Genome for Hirudo verbana, the Medicinal Leech. Cold Spring Harbor Laboratory. (DOI: 10.1101/2020.12.08.416024)

Singh, Ram N., Gnimpieba, Etienne, and Sani, Rajesh K.. Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). (DOI: 10.1109/bibm55620.2022.9995610)

Gurung, Bichar D., Devadig, Ramesh, Do, Tuyen, Gadhamshetty, Venkataramana, and Gnimpieba, Etienne. U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). (DOI: 10.1109/bibm55620.2022.9995609)

Haas, Sam, Hartman, Timothy W., Gurung, Bichar D., Do, Tuyen, Sani, Rajesh, Gadhamshetty, Venkataramana, and Gnimpieba, Etienne. Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). (DOI: 10.1109/bibm55620.2022.9995185)

Gnimpieba, Etienne, Pietri, Jose, and . MICROBIOME DIFFERENCES BETWEEN HUMAN HEAD AND BODY LICE ECOTYPES REVEALED BY 16S rRNA GENE AMPLICON SEQUENCING. Journal of Parasitology.

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